Salvelinus namaycush (lake trout): 120032871
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Entry
120032871 CDS
T07522
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120032871 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snh03400
]
120032871 (polb)
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120032871 (polb)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
120032871 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
120032871 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
HHH_8
DNA_pol_lambd_f
HHH_5
Cactin_mid
HHH_2
NTP_transf_2
DUF4806
Cdd1
Motif
Other DBs
NCBI-GeneID:
120032871
NCBI-ProteinID:
XP_038835059
UniProt:
A0A8U0TZP8
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All DBs
Position
Sna1:complement(30885393..30894226)
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AA seq
336 aa
AA seq
DB search
MSKRKAPQESPNEGITDFLTELANYERNVNRAIHKYNTYRKAASVISKYPQKIKNGEEAK
KLDGVGKEIAKKIDEFLQTGTLKKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVK
TLEDLKKIEHKLNHHQQIGLKYFEEFEKRIPRTEMTKMETLILQELELVDTEYIGTICGS
YRRGAESSGDIDILLTHPNYTSVDEKQPKLLHAVVEHFESIGFITDTLSKGDTKYMGVCQ
LQRNDEDEEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIR
PVGVTGMAGEPLMVDSEKDVFDYIQWKYREPKERSE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaggaaagcgccacaggaatccccaaacgagggaataacagactttcttacc
gaattggccaactatgagaggaatgtaaacagagctatacacaagtacaatacctacagg
aaagcagcttcagtgatctccaagtacccccagaagatcaaaaatggggaagaggccaag
aaactggatggcgttggaaaagagatcgctaagaagatagatgagtttttacaaacagga
acacttaagaagttagaaaagattcgtaatgatgacaccagctcctccatcaatttcctt
accagagtcactggtattggtcctgctgctgccagaaagttctttgatgagggagtgaag
actctggaagatctgaagaaaatcgaacacaagctcaatcatcatcagcagattggactc
aagtactttgaggagtttgagaagaggattccacgaactgagatgacgaagatggagact
ctcattctgcaggagctggagttggtggatactgagtacattgggacaatctgtggaagc
tacaggagaggtgctgaatccagtggggatattgatatcttactgacccacccaaactac
acctctgtggatgagaaacagcccaaacttctccatgccgtggtggagcattttgaatcc
attgggttcattacagacacactgtccaaaggagacaccaaatacatgggagtctgccag
ctgcagcggaatgatgaagacgaggaggaatatcttcacagacgcattgatatcaggtta
attcctaaggaccagtattactgtggtgtgctgtatttcactggcagtgacatcttcaat
aagaacatgagaactcacgctctggagaaaggcttcaccctcaacgagtacaccatccgt
ccagtgggggtcactggtatggccggggaacctctgatggtggacagtgagaaggatgtc
tttgactacatccaatggaaatacagagagcccaaagaacgcagcgagtga
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