Salvelinus namaycush (lake trout): 120063759
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Entry
120063759 CDS
T07522
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120063759 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120063759 (bard1)
04121 Ubiquitin system [BR:
snh04121
]
120063759 (bard1)
03036 Chromosome and associated proteins [BR:
snh03036
]
120063759 (bard1)
03400 DNA repair and recombination proteins [BR:
snh03400
]
120063759 (bard1)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
120063759 (bard1)
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
120063759 (bard1)
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
120063759 (bard1)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
120063759 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
zf-RING_5
PTCB-BRCT
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
120063759
NCBI-ProteinID:
XP_038869980
UniProt:
A0A8U1F5L2
LinkDB
All DBs
Position
Sna19:complement(19956768..19986022)
Genome browser
AA seq
821 aa
AA seq
DB search
MDPDLCTDEGWTKTKEAVAHFRKLLLCSKCSKLMNEPVCLGVCEHMLCRSCAGPQAGVGC
VVCHSPAWVKDIRINRQLSNITELYGNLDSLLNPTGSDYSDALPITPPAQSDKSVLKHKK
NFKIWFSPRSRKVRCRVEKPAAVPLPEVGSGTVKAAPRPPETLPESKGKDLSVFNFNSSS
QDSGSSSPQRATNYEKKKATKKTRNGGGGVRKPAAGGGQKPTTHKETKQNIKTQRLEAIN
QQWGFGGAREGDVREEEEQVTAEEGEHRSSKRVSFQSPDTLPATVEPQKEDLPQGNTIIL
SPSRSILKMVQPGENVPLSEDQDGPSTHTTPSQLDKISAKQHSKPNEEITTKPDLPSPPK
RTPKIFFVEEKNISQCTPQKPKASPGQGRRPAVDRVALPAMHTSPSPAASPRQGRSSTIT
KISREGAQQCGSSPCSPAPLGKRSPGRLSQNSPAVVKRNHKGETPLHLAAIKGDVETVKE
LLDQGADPNLKDNAGWTPLHEACNLGHQGVVEVLVERGGVLLNTPGYKNDSPLHDAVRNG
HTGIAMLLLQHGASQSVLNMFGLRPVDYAVTPEMQSILLAASEGPHPVNSPLSPPPSLNK
ASEVVRWGEQVVVLGSKLSQSQQTQLAKLRHLLGGKRADAFSCSVTHVVVPDGPMPTTLS
TLLGLLNGCWVLNFSWVEACLQADTWIAESDHKAGAGPQRSRINRHSLLPPLLDGCFFYL
MGSFRKPPRDELLQLVREAGGQILTRQPKPDSDVTQTLSAAAYHASPGSDQALCTQYIIY
DPQGSYRPPRLRLGKVWSAPSTWVVNCISAFQLLPVPELES
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgatctttgcaccgacgaaggctggacgaaaacgaaggaggctgtcgcgcat
tttcgaaaacttctgctgtgctcaaaatgttcaaaactgatgaacgaacctgtgtgcctt
ggagtttgtgaacatatgctttgcaggtcgtgtgctggtcctcaagctggagtgggatgt
gtggtgtgtcacagtcctgcctgggtgaaagacattcggatcaacagacaactcagcaat
atcacagaactctatggcaacctagactcactgctcaatcccactggctcagattactcc
gatgcccttcccattacaccaccagcacagtcagataaatctgtcttaaagcacaagaag
aacttcaagatctggtttagtccccgcagccgcaaggtgcgctgccgggtagagaagcct
gcggcggtgcctctaccggaggttgggagtgggactgtgaaagctgctccaagacctcct
gagacactacctgagtctaaaggcaaagacctgtctgtcttcaacttcaactcctcctcc
caagactctggctcctcctctcctcaaagggcgactaactatgaaaagaaaaaagcgact
aagaagacgagaaatggtggtggtggtgtcaggaagcctgcagctgggggtgggcagaaa
ccaaccacgcataaagaaaccaagcagaatatcaagacacagaggctggaggcaatcaac
cagcagtggggctttggcggagcgagagaaggagatgtcagagaggaagaagagcaggtc
actgcagaggaaggagagcacaggtctagtaaaagagtttccttccaaagcccagacacc
ctgcctgccactgtggagcctcagaaggaggatctccctcaggggaacaccataatcctc
agccccagcagaagcatcctgaagatggttcagccaggagagaacgtcccgctctctgag
gaccaggacggtccaagcacacacaccaccccttctcagctggataagatatctgcaaag
cagcactccaaaccaaatgaagaaattactacaaagcctgacctgccctcccctcctaag
cgcactcccaaaatattctttgtggaagagaaaaacatctcacagtgtaccccacagaaa
cccaaggcatctcctggccagggtagacgtccggcagtagacagggtcgcactcccagcc
atgcatacctcgccctcccccgctgccagccccagacagggtcgatcctctaccatcacc
aagatatccagagaaggagcgcagcagtgtggcagtagcccgtgttccccagcccccctg
gggaagagatccccgggcaggctgtcacagaacagtccagctgtggtgaagagaaaccac
aagggagagacacccctacacctggcagcaataaagggtgatgtggagacagtgaaggag
ctcctagaccaaggggctgaccccaacctgaaagacaatgctggatggacaccgctgcac
gaggcatgtaacctgggccaccagggtgtagtggaggtgttggtggagaggggaggcgtg
ctgttgaacacaccaggctacaagaacgattctcctctacacgacgctgtcaggaacgga
catactggcatcgccatgctactgctgcagcacggggcttcacagagcgtcttgaatatg
tttggccttcgccctgtggactatgccgtgaccccagagatgcagtcaatccttctggca
gcctctgaaggaccccacccagtcaactcacctctcagtcctccacccagcctcaataag
gccagtgaagttgtgagatggggggaacaggtagttgtactgggcagtaaactgtcccag
tcccaacagacccagctggccaaactgagacatctcctgggaggaaagagagcagatgcc
ttctcttgctctgtcacccatgtggtggtaccagacgggccgatgcccaccacactgtcc
actctcctgggcctcctgaacggctgctgggtcctcaactttagctgggtagaggcgtgc
ctgcaggcagatacctggattgccgagagtgaccataaagcaggagcaggaccgcaacgc
agccgcattaacagacacagcctgctgcctccgctgttggacggttgtttcttctacctc
atgggctccttcaggaagccccccagggacgagctcctccagctggtgagagaggcaggg
ggccagattctgacccgacagcccaaaccagacagtgatgtgacacagaccctgtctgct
gcagcctaccacgcctctccgggctcagaccaggccctgtgtacccagtacatcatctat
gatccccagggctcttacaggccacccaggctgaggttaggaaaggtgtggtcagctcca
tctacatgggttgtaaactgtatatcggccttccagctactgccagttcctgagcttgaa
tcatag
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