Spinacia oleracea (spinach): 110791021
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Entry
110791021 CDS
T05137
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
soe
Spinacia oleracea (spinach)
Pathway
soe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
soe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110791021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
soe03019
]
110791021
04121 Ubiquitin system [BR:
soe04121
]
110791021
03036 Chromosome and associated proteins [BR:
soe03036
]
110791021
03400 DNA repair and recombination proteins [BR:
soe03400
]
110791021
Messenger RNA biogenesis [BR:
soe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
110791021
Ubiquitin system [BR:
soe04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
110791021
Chromosome and associated proteins [BR:
soe03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
110791021
DNA repair and recombination proteins [BR:
soe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
110791021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-HC5HC2H_2
zf-RING_6
zf-C3HC4_4
zf-RING_5
zf-rbx1
zf-RING_10
PTCB-BRCT
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
110791021
NCBI-ProteinID:
XP_021851478
UniProt:
A0A9R0IM73
LinkDB
All DBs
Position
5:complement(52311142..52317775)
Genome browser
AA seq
974 aa
AA seq
DB search
MPDSSHLERMGRELKCPICLSLFDSSVSLTCNHVFCNACIHKSMKSGSNCPVCKVPYQRR
EIRPAPHMDNLVSIYKNMEVASGLTLFVSQNGPSTKLPPAEIQSNDDLDAMREAGEETPE
MKKCQRREVTPVASKMKSKRSGRNRGKSSFATNKRVQVPESPITESPARQEKDGLGQKKV
VINNLVNKCSTIPSVYQLSTDKERPHMSPFFWLREEVERSSIQTDEEQLTLTCTPVKAPS
FSDLKDSDDDVPPQNPLEEEPHSKYNTDIFDSEMFEWTQRERSPELCPSPFKEQVEETDC
DTASRDAAAIRKTNIEQLANVNPQENNSNLYNAPLNNAYPRRKSKGSRNKSKTTHKRGGK
ENKGSRRNNMENEKALGGPKAPSDFMQCQGFDTGILLKSSKAAGTYKTRQCQSLDVNLMN
EVDGHVLAKLPAASGSKRKDKKLGNIKRKIDSIEHIYEGDSLKRKKQMKNLAQPDNIEEK
SISLNEVSFEKPCRVIKGSHKCNASHKPKKIRQLTSVLEQKITENVNLRGKVADGGENVN
SKVAGSAEDNGVCGKSNNDNSVNSLKNRKVHCQKQMPALRKCDTVSIKCAFCHSSEDTEA
SGEMVHYSEGRPVLANHTEGSVIHSHKNCTEWAPNVYFEDNTAVNLEEELMRSRRIKCSL
CGVKGASLGCYEKSCRKSFHIPCAKKLKECRWDADHFVILCPLHTSLKLPCELPTSQIRR
GKYKSKGKLPSQRPQSAVKHATSTNRWDCGRPFEKVVLCCSALSTVEKEAVSELAKSSGA
VLLGSWDPSITHVIASTNENGACKRTLKVMMGILEGKWILSIKWVEACMAAKRLVEGTPY
EITCDIHGVQNGPLLGRLRHLNEEAKLFVGFNFYLTVDFEPAYKGYLQDLITAAGGTVLH
RKPIAETYGIVVSASSTVIVYSIEPPANCDLRKKDTILNCRRSDAEALAISSGAKLANNS
WVLNCIAGHKLQDL
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgccagattcgtcgcatcttgaacgaatgggccgagagctgaaatgccccatttgcttg
agtttgtttgattcttctgtttctcttacctgcaatcatgttttctgcaatgcatgcatt
cacaaatcaatgaaatctgggtccaattgcccagtttgtaaagtgccttatcagcgccga
gaaattcgccccgctcctcatatggataatcttgtaagcatctacaagaatatggaagtt
gcttcagggcttaccctctttgtttcacaaaatggaccttcgaccaaattgcctcctgca
gaaattcagtcgaatgatgacttggatgctatgagggaggctggtgaagaaactcctgag
atgaagaagtgccaaaggagggaagtaactcctgtagcatcaaaaatgaaatcaaaacgc
tctggtcgcaacagaggaaaatcttcatttgcaacaaacaaaagggttcaagtgcctgag
tctcccattactgagagtccagcaagacaggaaaaagacggacttggtcaaaagaaagta
gtaatcaacaatcttgtaaataagtgttctacaattccgagtgtatatcagctttcaact
gataaagaaaggccacacatgtcacctttcttctggttacgtgaagaagtagaaaggtca
agtattcaaactgatgaagagcagttgacattgacatgtaccccagtaaaagccccttct
tttagtgatctgaaggactcagatgatgatgtccccccacaaaatcctttggaagaggag
ccacacagcaagtacaacacagatatatttgacagcgagatgtttgaatggacacaaaga
gaacgctctcctgaactttgtccaagtccctttaaggagcaggttgaagagacagattgt
gatacagcttcaagagatgcagctgccatcagaaaaacgaatatagagcagctagccaat
gttaatccccaagagaataatagtaacctgtacaatgcgccactcaataatgcttatcct
agaagaaaaagtaaaggtagccgaaataagagtaaaactactcacaagagaggtggaaaa
gaaaacaaaggcagccgaaggaacaacatggaaaatgaaaaggcccttggtggtccaaaa
gcaccaagtgactttatgcaatgccaaggatttgatactggaattcttttaaaaagttca
aaagctgctggtacttataaaacaagacaatgtcaatcacttgatgtgaatttgatgaat
gaagttgatggtcacgtccttgccaagttgcctgctgcttctggaagtaaaagaaaagac
aagaaattgggaaatataaagaggaaaattgacagcattgagcacatatacgagggtgac
tcactgaaaagaaagaagcagatgaagaacttggcacagcctgataacattgaggaaaaa
tctatctcattgaatgaagtgtcttttgaaaagccttgcagagtcataaaaggatcacac
aaatgcaacgccagtcataaacctaagaaaattcgtcaattgacatccgtgcttgaacaa
aagattactgaaaatgttaacttaagaggaaaggttgctgatggaggtgaaaatgtaaat
tcaaaggttgccggatcagctgaagataatggtgtttgtggaaaatctaacaatgataac
tcagtaaattcacttaagaacagaaaggtccattgccaaaaacaaatgccagctttgcgc
aaatgcgatacagtttccataaaatgtgccttttgtcattcatctgaagacacagaggct
tctggtgagatggttcactactctgaaggtagaccagttttagccaatcacactgaaggt
tctgtcatccactcacacaaaaattgcactgaatgggcccctaatgtttattttgaagat
aatactgcggtcaaccttgaagaagaattgatgagaagccgtaggattaagtgctctttg
tgtggagtaaagggggcctctctgggctgttatgagaagagttgtcgcaaaagtttccat
atcccttgtgccaaaaagcttaaagagtgtcgttgggatgccgatcactttgtcatatta
tgtcctcttcacacctctttaaagttaccctgtgaattgcctacatcacaaattagaaga
ggaaaatataagtcgaaggggaaacttcccagccaaagacctcaatctgcagttaaacat
gctactagtacaaatagatgggattgtggtcggccatttgagaaagtagtcctctgttgt
tcagctctttcaacggtagagaaggaagctgtttctgagttagcaaagtcatctggagct
gtgctattgggaagctgggatccaagtattactcatgttattgcatcgacgaatgaaaat
ggagcatgtaaaagaacactcaaagttatgatggggatcttggaaggaaaatggatatta
agcatcaaatgggttgaagcatgcatggcggccaagagactagttgaggggactccatat
gaaatcacttgtgacattcatggtgtccagaatggccctcttttaggaagactaagacat
ctaaacgaggaagcaaagctctttgttggattcaatttttatttgactgtagattttgaa
cctgcatacaagggttatctacaagaccttattactgcagctggaggaactgttctacac
aggaagcccattgcagaaacatatggaatcgttgtaagtgcttcatcaactgtcatagtc
tacagcattgagcctcctgctaactgtgatcttcgtaagaaggatacaattctaaactgc
aggcgatctgatgcagaagctcttgccatttcaagtggtgcaaaactggcaaacaattca
tgggttctgaattgcattgctggacataaactgcaagatctgtga
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