Solanum pennellii: 107028944
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Entry
107028944 CDS
T04130
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107028944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107028944
04121 Ubiquitin system [BR:
spen04121
]
107028944
03036 Chromosome and associated proteins [BR:
spen03036
]
107028944
03400 DNA repair and recombination proteins [BR:
spen03400
]
107028944
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107028944
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
107028944
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107028944
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107028944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
zf-HC5HC2H
BRCT
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_6
zf-C3HC4_4
zf-RING_5
RTT107_BRCT_5
PTCB-BRCT
zf-RING_10
zf-UDP
Pantoate_ligase
DUF5434
Motif
Other DBs
NCBI-GeneID:
107028944
NCBI-ProteinID:
XP_015085677
LinkDB
All DBs
Position
8:complement(15497377..15503641)
Genome browser
AA seq
998 aa
AA seq
DB search
MADISHLERMGRELKCPICLSLFNSAVSLTCNHVFCNLCIQTGMKSGSNCPVCKVPFHRR
EIRPALHMDNLVSIYKNMEIASGVNMFLTQSNPSTKLPGENTQSNGEKVCGFQETPKTVT
EAPATDNQKRKRGKGSKRSSGCNKKISGSNLIRPSFPTKKRVQVPQYPPSETPPPTKLVG
GNGKSITDEVQKPLVIERDRSMLNEKGEPVLSPFFWLREEDVERSSQQTDGDIIMDTPPA
FPSFSDMKDLDDEVHCEMTPKSGPYDAANGADLFDSEMFDWTQRACSPELCSSPFKMKLK
DTIDSAEAQEKTQAHSVEESDINASATENRTAVENEKGTDKGQLSSPAIFSPVNKTTSRK
DVVCKSSRSKSLRSSQKKQGKNIIGELSEVHDASLKAAENTMKNNQDNANAFISNKKDLK
NKKKGRSSRNVTESVVEDISTSCGAKRLRKGNNSKSFNLSTIVNQEKHSEGSVETLDLKT
HSIFRKGSLREQTKNCFGPKGGKKTAVCNIPQTQDEALPFESANRLIPMDNKKPTPSTKL
KKCELGSDNKLHGKKKVKFSDDGQLADKDNITLQKIQKRVLNSLETEKSVLNSNDSVLQK
CEASQSKIQCAFCRSAEISEVSGVMVSYLNGNPVKEDVNGAPGVIHVHKYCAEWAPNVYF
GDDDVVNLESELKRSRRITCFFCGVKGAALGCYEMSCRKSFHVPCAKLTPECRWDSDNFV
MLCPLHANSKLPSEIPGKQTKIGDSIKRNSRIHQPKVSATPDNGATLQWKSQKKNKNLVL
CCSALTADEKELVSTLKRLSGVTVVKNWDLSVTHVIASTDEKGACRRTLKYLMGVLAGKW
IMSINWIIASLEATEYVDEQQYEIKIDTHGIVDGPKLGRLRILNKQPKLFNGYKFFFMGD
FLPSYKSYLHDLVIAAGGIVLNRKPIALDQEILSPGCPLLFVIYSHEQLDQCEGSEKISI
IARRRSNAEVLASSTGAVAASHSWILNCIAGSRLLELE
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatttcgcaccttgaaagaatgggaagagagctcaaatgccccatttgcttg
agtctgttcaattctgctgtttcacttacatgtaatcatgtattttgcaatttatgtatt
caaactggtatgaaatctggatccaattgtccggtgtgcaaagttccatttcatcgcaga
gaaatccgacctgctctccacatggataacttggtgagcatctataagaacatggaaatt
gcttcaggagtcaatatgtttctcactcaatccaatccttccacaaaattaccaggggaa
aacactcaatctaatggcgaaaaagtttgtggattccaagagacacctaaaactgtaaca
gaagctccagcgacagacaatcagaaaagaaaaagagggaaaggatcaaaaagatcttca
gggtgcaacaaaaaaatttccggatcaaatcttattagaccttcttttccgacaaagaag
agagtacaggtgccacaatatccaccttcagagactccaccacctacaaagttagttggt
ggaaatggcaaatccatcaccgatgaagttcagaaaccattggtaattgagagagatagg
tctatgctaaatgaaaaaggagaacctgtgctatctccattcttctggctgagagaagag
gatgtagaaagatcaagtcagcaaacagatggggacattatcatggatactcctccagct
tttccatccttcagcgatatgaaagacttggatgatgaggttcactgcgaaatgactcca
aaaagtggaccctatgatgcagcaaatggagcagatctttttgacagtgagatgtttgac
tggacacaaagagcttgctcccctgaactttgttctagtccgtttaagatgaagcttaag
gatactattgattctgctgaagctcaggaaaagactcaagctcactcagttgaggaaagt
gacattaatgcatcagcaactgaaaacagaacagctgtggaaaatgaaaagggtactgat
aaaggacagctgagttcacccgcgatattttctcctgtaaataaaaccactagtagaaaa
gacgttgtttgcaagtctagcaggagcaagtcattgagaagtagccagaagaaacaagga
aaaaacataattggagaattatcagaagttcatgatgcttcactaaaagcagctgaaaac
actatgaagaacaatcaggataatgccaatgcatttatctcgaataagaaggatttgaaa
aacaagaaaaagggtagatcctctagaaatgtcactgagtcagtagtagaagacatttcc
acttcatgtggtgctaaaagacttcgcaagggcaataactcaaagtccttcaacttgtct
actattgtgaatcaggaaaaacatagtgaaggaagtgtcgagacacttgacttgaagaca
catagtatattccgcaagggatcattacgtgaacaaactaaaaactgttttggaccaaaa
ggcggaaagaaaactgctgtgtgtaacattccacaaactcaagatgaagctttgcctttc
gaatcagcaaatagattgattcccatggataacaagaaacccactcctagtacaaaactg
aagaaatgtgagcttggtagtgacaacaagcttcatgggaagaaaaaagtgaagttttct
gatgatgggcagcttgctgacaaggataatattacgcttcaaaagattcagaagagagtg
ctcaattcattggaaacagagaaatctgttttgaactcgaatgattcagttttgcagaag
tgtgaggcaagccaaagcaaaatacaatgtgctttctgccgttcagcagagatatctgag
gtttcaggagtcatggtaagctaccttaatggaaaccctgtcaaagaagatgtcaatgga
gcaccaggtgttatacatgttcacaaatattgtgcagaatgggcccctaatgtatatttt
ggagacgatgatgtggtcaaccttgaatctgaactgaagaggagtcgaaggatcacttgt
tttttctgtggagtaaagggggcagctcttgggtgttatgagatgagttgtcgcaaaagc
tttcatgttccttgtgccaaattgacaccagagtgtagatgggattctgataactttgtt
atgttatgccctttgcatgctaactctaagttgccatccgagatcccaggaaaacagaca
aagattggagatagcattaaaagaaattctcgtatccaccaacccaaagtctcagcaaca
cctgataatggtgctactttgcagtggaagtctcagaagaagaataagaacttagtgctc
tgttgttcagctctaaccgcagatgaaaaagagcttgtttctacattaaagaggttgtct
ggcgtgacagtagtcaagaactgggacctaagtgtcacccatgtcattgcttctactgat
gagaaaggagcatgccgaagaactctcaagtatttgatgggtgtcttggctgggaaatgg
ataatgagcatcaactggattattgctagcttggaagccacagaatatgtcgatgaacaa
caatatgagattaaaatagatactcatggcattgtggatgggcctaagcttggaagattg
aggattttaaacaagcaaccaaagcttttcaatggatacaagttcttttttatgggcgac
tttttaccttcatacaagagctacctacatgaccttgttattgctgctggaggaattgtc
cttaacaggaagcctattgcactggatcaggaaattctttcacccggatgccctctactg
tttgtaatttatagtcacgaacaacttgatcagtgtgaaggaagtgaaaaaatttcaatt
atagcgcgcagaagatctaatgcagaagttttggctagttcaactggagctgtagctgcc
agccactcatggattctaaactgcattgctggctctaggttgttggagctggaatag
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