Sinocyclocheilus rhinocerous: 107727426
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Entry
107727426 CDS
T04916
Name
(RefSeq) histone deacetylase 6-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
srx
Sinocyclocheilus rhinocerous
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
srx01009
]
107727426
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srx03019
]
107727426
04131 Membrane trafficking [BR:
srx04131
]
107727426
03036 Chromosome and associated proteins [BR:
srx03036
]
107727426
Enzymes [BR:
srx01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
107727426
Protein phosphatases and associated proteins [BR:
srx01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107727426
Messenger RNA biogenesis [BR:
srx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
107727426
Membrane trafficking [BR:
srx04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107727426
Chromosome and associated proteins [BR:
srx03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
107727426
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
107727426
NCBI-ProteinID:
XP_016392781
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MDPVPDSKGSTRSPRGTSETKRENNNPNQKKNLQEARRKGRMDRSKEEEEMSNELKNLDV
RGKTKATGTGLVYVDAFTRFHCLWDASHPECPARVSAVMEMLETEGLLGRCVQVEARAVS
EDELLLVHTKAYVELMKSTQKMTEEELKTLAHKYDSVYLHPEFFASACLAVGSVLQLVDK
VMTSQLRNGFSINRPPGHHAHADKMNGYCMFNNLAIAARYAQKQHGVKRVLIVDWDVHHG
QGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKIGMEDG
DYVTAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRVSPQCFSILTHMLKGVAQGR
LVLALEGGYNLQSTAEGVCASVRSLLGDPCPHLTSPGDPSESALKSISESISALYPFWKS
LQTFEGGPLSDVTPLPAPVCAEVKVSSPITGLVYDQRMMLHHNMWDGHHPELPQRISRIF
CRHEELGLLSRCLQIPARLATEEELALCHSSEHISTIKSTEHMKPRDLHRLGNDYNSIYI
CNESYTCALMAAGSCFNSVQAIITGHVRNGVAIVRPPGHHAEKDTACGFCFFNTAALTAR
YAQSITHESLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPSSEDANYDKV
GQGKGTGYNVNIPWNGGKMGDPEYMAAFHHIVMPIAREFAPELVLVSAGFDAARGDPLGG
YQVTPEGYAHLTHQLMSLAAGRVLVILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLPP
PKTSATVTINNVLRAHVPFWSSLRIQIPESLRLALPSPKSKGKRASAGKSKKSPRQSTQS
PGQTPQHLEESGLDELSKDLLSLNLNTSTSSNPSPASVPIGGARRKVKPNPQRDSAGRES
DSPLKLKSEKARVGDGTHAEITAVKAETPDRTIPESVVSGKSAAVDDQESSVLEAAGGHT
TMMSVLQSVFGAQATDLDTMYVVDPLSWCPHLESVRPVPAGGIDVFLPCEECGGDTENWI
CLFCHKVLCGRYVKQHMVTHGQVSGHPMVLSFADLSVWCYACESYVHNKVLHEAKSAAHL
VKFGEEIPPFS
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgttccagattccaaaggttctactcgatcaccgagaggaacatctgaaacc
aaaagagaaaacaacaatccgaaccagaagaagaatctacaggaggcgcggaggaagggc
agaatggatcggagcaaagaggaggaggagatgagcaatgaactcaaaaacttggatgtt
cgtggtaagactaaagcaacaggaacaggtctcgtctacgtagatgcctttactcgcttt
cactgcctctgggatgccagtcacccggagtgtccagcaagagtgagcgctgtgatggag
atgctggagacggaaggtctgctgggacgctgcgtacaagtagaggccagagctgtgtca
gaagatgagctgttactcgttcatacgaaggcgtatgtagagctgatgaaatccacacag
aaaatgacagaggaggagctgaaaactttggctcataaatatgattctgtctacctgcat
cctgaatttttcgcctccgcctgtctggcggtgggatcagttctccagctggtggataaa
gtgatgacatcacagctgcgtaacggcttctccatcaacaggcctcctggtcaccatgct
catgcagataagatgaatggctactgtatgtttaataatctggccatagcagcgcgctac
gcacagaagcagcatggagttaaacgagttctgattgtggattgggatgtgcatcacgga
cagggaatccagtatatttttgaagaggatcccagtgtgctgtatttctccgtgcacaga
tatgaagacggctcgttctggccgcatctcaaggagtctgacagcagttcggtgggttca
ggagcaggacagggctacaatatcaacctgccctggaacaagatagggatggaggatgga
gattacgtcacagctttccagcagctcctgcttccagtggcgtatgagtttcagcctcag
ctggtgttagtggcggctggctttgactctgtgattggtgacccaaagggtgagatgcga
gtgagtccacagtgtttctccatcctgacccacatgctgaaaggtgtagcacagggtcga
ctcgtgctggctcttgagggtggatataacctccagtccacagcagagggtgtttgtgct
agtgtgaggtcactgctgggtgacccttgccctcatctgacctctcctggcgatccgagt
gaaagtgctctgaagtccatctcagagtccatctcagccttgtatccattttggaagagt
cttcagacttttgagggtggtcctctgtctgatgtcactcccctgcccgctccagtgtgt
gcagaagtgaaggtttcctctccgatcactgggctggtttacgaccagagaatgatgctt
catcacaacatgtgggatggtcatcatccagagctccctcagagaatttctcgcatcttt
tgccggcatgaggagctgggtctgctgtcccgttgccttcagataccagctcgcctagca
acagaagaagagctggcactctgtcacagttctgagcatataagcactataaagagtaca
gagcacatgaaacccagagatctgcaccgtctgggaaacgattacaactccatctacatc
tgtaatgagagctacacctgcgccctgatggccgcagggtcgtgttttaactctgtacag
gccataatcacaggccacgtgagaaatggcgtggccatagtccgtcctcccggtcatcat
gcagagaaagacacagcttgtggtttctgtttctttaatacggctgctttgaccgcacgc
tatgcccagagcatcactcacgaatccctgcgtgtcctcatcctggattgggatgttcac
catggaaacggcacacagcacatctttgaggaggatgacagtgttctgtacatctccctg
catcgctacgaagacgggacattcttccccagttcagaggatgctaactatgacaaggtg
gggcaggggaagggcacaggatacaatgtcaacatcccctggaatggaggaaagatggga
gacccagaatacatggcggctttccatcacatagtgatgccgatagccagagagtttgcc
ccagagctggtgctggtgtctgctgggtttgatgcagcacgaggtgatccgttaggaggg
tatcaggtgaccccagagggctacgctcacctcacccatcagttaatgagcctggctgca
ggaagagtgctagtcatactggagggaggatataacctcacctccatctctgagtcaatg
tccatgtgcaccagtatgttgctgggagactctcctccgtctctagaccatctgccccct
ccgaagaccagcgccactgttaccattaacaatgtcttgcgtgcacacgtccccttttgg
agctccttgagaatacagattccagagtcacttcgtttggctttgccgtctcctaaatcg
aaaggcaagcgggcatcagcgggcaagagcaagaaatctcctcgccagtccacccagagt
cctggacagacaccgcagcatcttgaggaatccggccttgatgagctcagtaaggacctg
ctctctctgaatctcaacacaagtacctcatctaaccccagcccagcgtctgtccccatt
ggaggagccagacggaaggtgaaacccaacccacagagggattcggcaggccgggagtca
gattcacccctaaaactcaagtcagagaaagccagagttggagatggcacgcatgcagag
attacagctgtaaaagcagagacacctgaccggacaatcccagagtctgtggtctctgga
aagtcagctgccgtggatgatcaggagagttcagtgctggaagctgctggtggtcacacc
actatgatgtcagtcttacaaagtgtctttggagcacaagccacggatttggacaccatg
tatgtggtggacccgttgtcatggtgcccacacttggagtcagtgcgaccggtgcccgca
ggtggcatcgatgtcttcctgccgtgtgaagagtgtggaggggatacagaaaactggatc
tgcctcttctgccacaaggtgctctgcgggcgttatgtgaagcagcacatggtgacccac
gggcaggtgtcgggtcaccctatggtgctgagcttcgctgacctttctgtctggtgctac
gcttgtgagtcatacgtccacaacaaggtgctccatgaagccaaaagtgctgctcacctt
gtgaagtttggagaggagattcctcctttcagctga
DBGET
integrated database retrieval system
