Trematomus bernacchii (emerald rockcod): 117485589
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Entry
117485589 CDS
T09643
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117485589 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117485589 (bard1)
04121 Ubiquitin system [BR:
tben04121
]
117485589 (bard1)
03036 Chromosome and associated proteins [BR:
tben03036
]
117485589 (bard1)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117485589 (bard1)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117485589 (bard1)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
117485589 (bard1)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117485589 (bard1)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117485589 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_3
Ank_4
Ank_5
BRCT_2
BRCT
zf-RING_5
zf-RING_10
zf-RING_UBOX
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
117485589
NCBI-ProteinID:
XP_033990071
EnsemblRapid:
ENSTBNG00005009052
LinkDB
All DBs
Position
Unknown
AA seq
780 aa
AA seq
DB search
MDNDAVIPTQDWKNTKEAVANFRQLLLCSKCSNVMTEPVCLGICEHMLCRSCAGPGAGDG
CVVCQSPAWVKDIQINRQLSSIIQLFSGLESLLNPTEQPAEKSLAEIQTPPHSPVLKHKK
NVKIWFSPRSRKVRCTVEKPSKVTVPESTSSGETAAAQPDALTAPPQDLSVFNFTSSSQD
SGSSSPERSKNEKGKKRTKLNASSREVMKRGPIRAPRIQSRQQMKKNRLEAINQKWGITE
EMDALEEKELSCDEGPRKSSKRVTFLSPVDMSDETLTEVPQGSTNELGTTRESLSGGSSP
VLNDQTPPDTQILEKLPDKSPLKHSPKRSRLEEEGATLETTPKRPRASPGKRGRSQMSPA
VLSPFSTSPKGDKSVKNSRKEKGASPIVPSPAGRRSPRSPSASVGRPPSGIPAVMKRNHK
GESPLHLAAIKGDVEAVKELLEQGADPNLKDNAGWTPLHEACNLGHLPVVEVLVSGGALL
NTPGYKNDSPLHDAVRNRRPAIAKLLLQQGASQNVLNQCGKRPADYAASPEMLEIFQEAS
EGIQCANTSLSPSALSMVSDCVRRDEMAVFLTTKLSQAEQLQVAKLGELLEGRMADTFSG
SVSHVVVPEGHMPTTSSTLMGLLAGCWVVKFSWVEACLQAGEWMPENEHEAGEGPQRSRI
NRCSLLPPLFDGCFFFLLGSFKAPSKDVLTKLLREGGGQLLIRQPKPDSDVTQTLSAAAY
HALPGSDQALCTQYIIFDRQGPHKPPVVRRGKVWSAPSNWIIDCIAAFRLLPVSDSQTSV
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggataatgatgccgtcattcctacacaggattggaagaacactaaggaggcggttgcg
aactttcgacagcttctgctttgctccaaatgctcaaatgtaatgacggagcctgtgtgt
ctaggaatttgcgagcatatgctgtgcaggtcctgtgcgggccccggggccggagatggc
tgcgtggtgtgtcagagtcctgcttgggtgaaggacattcaaatcaacaggcagctcagc
agcatcatacagctcttcagcgggttggagtccctgctcaatcccacagaacaaccagca
gagaagtctctagctgagatccaaactccacctcatagtcctgtcctcaaacacaagaaa
aacgtcaagatctggttcagcccccgaagccgcaaggtccgctgcaccgtggagaagcct
tcaaaggtcaccgtaccggagagcacgtcttctggagaaacagccgcagcacagccagac
gcccttactgctccacctcaggacttgtcagttttcaatttcacctcgtcctcccaagac
tcaggctcttcctctcctgaacgaagcaaaaatgaaaaagggaagaagagaactaagcta
aatgcttcgagcagggaggtgatgaagcgtgggcccattagggccccacggatacaaagc
aggcagcagatgaagaagaacaggctggaggctataaaccagaaatgggggattaccgag
gagatggatgctttagaggaaaaggagctgtcctgcgatgaagggccaagaaagtccagc
aaaagagttaccttcctaagccctgttgacatgtctgacgagactctgactgaagtgcca
cagggaagcactaatgaactcggcaccacgagggagagtctctcaggaggcagcagccct
gtactgaatgaccaaacaccgcctgacactcagattcttgaaaaacttcctgacaaatct
cccctaaagcattcaccaaagagatccagactggaggaggagggtgccactttggagacc
acaccaaaacggccaagggcttccccaggcaagcgggggagatcccagatgtctccagct
gtcctgagccctttttcgactagccccaaaggtgataaaagtgtcaaaaactcaagaaaa
gagaaaggagccagcccgattgtcccatccccagctggaagaaggtctccccgttctccc
agtgcatctgttggacggcccccctcggggatccctgcggtcatgaagaggaaccacaag
ggagaatctccgctccatctagctgctataaagggcgacgtggaggctgtcaaggaactc
ctggagcagggcgctgaccccaacctgaaggataatgctgggtggacccctctgcatgag
gcgtgtaacctgggtcacctgccggttgtggaggtgttggtctcagggggggccctgttg
aatactcccggctacaaaaatgactctccactccacgatgctgtgaggaaccgacgccca
gccatcgccaaactgctgctgcagcaaggagcctcgcagaacgtacttaatcagtgtgga
aagcggcctgcagattacgcagcgagtccagagatgctggagattttccaggaagcctca
gaagggatccaatgtgcaaacacatctctcagcccctctgctctctctatggtgagcgac
tgtgtgcggagggatgaaatggccgtgtttctgaccactaagctgtcacaggcagaacag
ctccaagtggccaaactgggagagctactggaagggaggatggccgacaccttctctggc
tcagtgagccatgtcgtggtgccagaaggacacatgcccaccaccagctctaccctcatg
ggtcttcttgctggctgctgggttgtcaaattcagctgggtggaggcatgtctgcaggca
ggcgagtggatgcccgaaaatgagcacgaagcgggagaaggcccacagcgaagtcgcatc
aacagatgcagcttgctcccaccgctcttcgacggctgtttcttcttcctccttggctcg
ttcaaggcgccgtccaaagacgtgctcaccaagctgctcagggagggggggggtcagctc
ctgatccggcagcctaagcccgacagcgacgtgacgcagaccctgagcgctgcggcctac
cacgctctgccgggctccgaccaggccctctgcacccagtacatcatctttgaccgccag
ggcccccacaagccaccagtggtgaggaggggcaaggtgtggtccgctccctccaactgg
atcatcgactgcatcgctgccttccgactcctccccgtgtctgactctcaaacatcggtt
taa
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integrated database retrieval system
