Trachemys scripta elegans (red-eared slider): 117872178
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Entry
117872178 CDS
T07347
Symbol
ABCB1
Name
(RefSeq) ATP-dependent translocase ABCB1
KO
K05659
ATP-binding cassette, subfamily B (MDR/TAP), member 4 [EC:
7.6.2.2
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117872178 (ABCB1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tst02000
]
117872178 (ABCB1)
Enzymes [BR:
tst01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
117872178 (ABCB1)
Transporters [BR:
tst02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
117872178 (ABCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
Zeta_toxin
AAA_16
RsgA_GTPase
Rad17
AAA_5
DUF87
AAA_15
AAA_30
AAA_29
AAA_14
G-alpha
SbcC_Walker_B
AAA_7
DUF815
PRK
nSTAND1
AAA_24
NTPase_1
Motif
Other DBs
NCBI-GeneID:
117872178
NCBI-ProteinID:
XP_034616269
LinkDB
All DBs
Position
2:complement(40521109..40609482)
Genome browser
AA seq
1265 aa
AA seq
DB search
MSDANGRAGDAAVPDQDCESKDKCEDEKKPKKPNVVSPLTMFRYSDWLDKLLMVLGSAMA
ILHGAALPIMMIIFGDMTDSFVNPGNISNPGNISFNPYQKLEEQMTSYAYYYSGIGAGVL
FAAYMQVAFWTLAAGRQIKKIRQQFFHSIMRQEIGWFDVNDVGELNTRLIDDVSKINEGI
GDKIGMLFQAIATFLTGFIVGFTKGWKLTLVILAVSPVLGLSAALWAKILSAFTDKELTA
YAKAGAVAEEVLAAIRTVIAFGGQKKEIKRYHKNLEDAKNIGIKKAITANISMGIAFLLI
YASYALAFWYGATLVLSDDYTIGKVLTVFFAILVGAFSVGQTAPGMEAFANARGAAYAIF
NIIDNEPQIDSFSETGYKPDHIRGNLEFRNVYFNYPSRQDVKVLKGLNLKVNCGQTVALV
GSSGCGKSTTVQLIQRFYDPEKGVITIDGQDIKTLNLRYLREIIGVVNQEPVLFATTIAE
NIRYGREDVTMEEIEKAVKEANAYDFIMKLPDKFETMVGERGAQLSGGQKQRIAIARALV
RNPKILLLDEATSALDTESESVVQRALDKAREGRTTIVIAHRLSTVRNADLIAAFEDGVI
TEQGTHHELMKTNGIYCKLVNMQTIGTEVQSEEEAENTTKVALKESIGNGLRRRSTRKSI
KKSEIQDDSLDVKTVQPDENVPPVSFLKVMKMNKTEWPYFVVGTFSAIINGALQPAFAII
FSEIIGVFAEPDKTVVRNKSNLYSLLFLALGIISLVTFFLQGFTFGKAGEILTMRLRFMA
FKAMLRQDISWFDDPKNSTGALTTRLANDASQVKGATGARLALITQNIANLGTGIIISLV
YGWQLTLLILAVVPVIAIAGIVEMKMLSGHAKKDKEELEVAGKVATEAIENIRTVVTLTQ
ERKFEFLYGQNLQGPYRNSVKKAHIFGFTFGLTQAIMYFTHAACFRFGAYLVVNGYMDFK
SVFLVFSAIVFGAMALGQASSFTPDYAKAKMSAAHLFMLFERAPLIDSYSDEGLKPDIFG
GNIAFKEVMFNYPTRPDVQVLQGLNINVEKGQTLALVGSSGCGKSTVVQLLERFYDPLNG
ELLLDGQNAKALNIQWLRAQIGIVSQEPILFDCSIAENIAYGDNSREVSSEEIVNAARAA
NIHSFIDSLPNKYNTRVGDKGTQLSGGQKQRIAIARALVRHPQVLLLDEATSALDTESEK
VVQEALDKARQGRTCIVIAHRLSTVQNADKIVVIQNGRVVEQGTHQQLLAEKGVYYSLVN
VQAGP
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcgaatggaagagctggtgatgctgctgtaccagaccaggattgtgaatcc
aaagacaaatgtgaggacgagaagaagccaaagaaacctaatgtggtcagcccattaaca
atgtttcggtactctgattggttggataaattactaatggttcttggctctgccatggca
atccttcatggtgcagctctcccaatcatgatgataatctttggagatatgacagatagc
tttgttaatccaggaaacatatctaatccagggaatatttcttttaatccttatcagaaa
cttgaggaacaaatgaccagctatgcatactattattctggaataggagctggcgttcta
tttgcagcctacatgcaagttgcattttggacactggcagctggccggcaaattaagaaa
atcagacaacaatttttccactcaataatgcgacaggaaattgggtggtttgatgtgaat
gatgttggggaactcaacactcgacttatagatgatgtgtccaaaattaatgaaggaatt
ggtgacaaaattggaatgctctttcaggcaatagctacatttctcacaggatttatagtt
ggtttcacaaaaggatggaaattaacccttgtaatactggcagtcagtcctgtcctggga
ctctcagctgctctctgggcaaagatactctctgcattcactgacaaagaactaactgca
tatgcaaaagcaggagctgttgcagaggaagttctggcagcaattcggactgttattgct
tttggaggacagaaaaaagaaatcaaaaggtatcataaaaatttagaagacgccaaaaat
attggaatcaagaaggctattacagccaacatttctatgggtattgctttcttactgata
tatgcatcatatgcattggcattttggtatggagccactttggtgctatctgatgattat
actattggaaaagtccttacggtcttttttgctatattagttggagcatttagtgttgga
cagactgcaccaggtatggaggcatttgctaatgcaaggggagccgcctatgcaatcttt
aatatcatagacaatgaacctcaaattgacagtttttcagagactggctacaaaccggac
cacattagagggaatttggaattccgcaatgtttatttcaattatccatctaggcaagat
gtaaaggtattgaaaggcttgaatctgaaggttaattgtggccagacagtagccttggtt
ggtagcagtggctgcgggaaaagtacaactgttcaactgatccagagattttatgatcca
gagaagggcgtgattactattgatgggcaggatattaagaccctaaatttaagatatctg
agggagattattggtgtggtgaatcaggagcctgtgctattcgctactactattgcagaa
aacatccgctatggccgtgaagatgtcactatggaagagattgaaaaagctgtcaaggaa
gccaatgcctatgactttatcatgaaactgcctgataagtttgaaaccatggttggagaa
agaggggcacaactgagtggaggtcagaaacagagaatagctattgcacgagccctggtt
cgcaatcccaagattcttctgctcgatgaggcaacttcagctttggacactgaaagtgaa
tcagttgtgcaaagagcactggataaggctagagaaggccgcaccaccattgtaatagct
catcgtttgtctacagtccgaaatgcagatcttatagctgcatttgaagatggagtcatc
acagaacaagggacccatcatgaactgatgaaaacaaacggaatttactgcaaacttgtt
aacatgcagacaataggaactgaagttcagtcagaagaagaagctgaaaacaccaccaaa
gtggcactgaaagaatcaataggaaatggcttgagaaggagatcgactcgaaaaagcatc
aaaaagtcagaaatacaggatgatagccttgatgtgaaaactgttcaacctgatgaaaat
gtgcctccagtttcatttctgaaagttatgaagatgaacaaaacagaatggccttacttt
gtagttggaactttttctgcaattatcaatggagctttacaacctgcatttgcaataata
ttttcagaaattataggggtttttgcagaaccagacaagacagttgtaagaaacaagtcc
aacttgtattcactgctatttttagcacttgggatcatttctttggttacttttttcctt
cagggtttcacgtttggcaaagctggagagatccttacaatgaggcttcgattcatggca
tttaaagcaatgcttagacaggacatcagctggtttgatgaccctaaaaacagcactgga
gcattaactacaagacttgctaatgatgcctcacaagtgaaaggagctacaggtgccaga
ctggctttaattacccaaaacatagctaaccttggaactggaattattatatcattggtc
tatggctggcagctgactcttttgattttagccgttgtgccagtcattgccatagcagga
atagttgaaatgaaaatgttatctggacatgcaaaaaaggataaagaagaactggaagtt
gcaggaaaggttgctactgaagccatagaaaatattcgaactgttgttactttgacccag
gaaagaaaatttgaatttctgtatggacaaaatttgcaaggaccatatagaaattctgtg
aagaaggcacatatctttggatttacttttggccttacacaagcaattatgtattttacc
catgctgcatgttttcggtttggtgcctatctagtggtaaatggatacatggactttaaa
agtgtgtttctggtattttcagctattgtatttggtgcaatggcactaggacaggccagt
tcatttactccagactatgccaaagccaagatgtcagcagcacacctgttcatgctgttt
gaaagagcccccttaatagacagttacagtgatgaaggactgaagcctgatatatttggt
ggcaacatagcattcaaagaagtgatgtttaactatccaactcgaccagatgtccaagtg
cttcaaggtttgaatattaatgtagaaaaaggacagacactggcgcttgtaggcagcagt
ggctgtggaaagagcactgttgttcaattgcttgagagattctatgatcctcttaatgga
gaactgctgctggatggccaaaatgcaaaggcattaaatatccaatggcttagagctcag
attggtattgtctcacaagagccaatcctgtttgactgcagtattgctgagaatattgca
tatggagataacagtagagaggtgtcatctgaagagattgtaaatgcagcaagagcagcc
aacatacattccttcattgactctctgccaaataaatataatacccgtgtgggagacaaa
ggaactcagctgtcgggtggtcagaagcagcgtattgctattgctcgagctcttgtacgt
catcctcaagttctgctactggacgaagccacatctgctctagatacagaaagtgaaaag
gttgtccaagaagcactggataaagcaagacaaggtcgcacctgtattgtaatagctcat
cgcctgtccactgtgcagaatgctgacaagatagtggtaatccagaatggaagggtcgta
gaacaaggaacacatcagcaactcttggctgaaaaaggcgtctactattctctagttaat
gttcaagctggaccatga
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integrated database retrieval system
