Verticillium dahliae: VDAG_00890
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Entry
VDAG_00890 CDS
T03450
Name
(RefSeq) histone deacetylase clr3
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
vda
Verticillium dahliae
Brite
KEGG Orthology (KO) [BR:
vda00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vda01009
]
VDAG_00890
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vda03019
]
VDAG_00890
04131 Membrane trafficking [BR:
vda04131
]
VDAG_00890
03036 Chromosome and associated proteins [BR:
vda03036
]
VDAG_00890
Enzymes [BR:
vda01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
VDAG_00890
Protein phosphatases and associated proteins [BR:
vda01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
VDAG_00890
Messenger RNA biogenesis [BR:
vda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
VDAG_00890
Membrane trafficking [BR:
vda04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
VDAG_00890
Chromosome and associated proteins [BR:
vda03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
VDAG_00890
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arb2
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
20702353
NCBI-ProteinID:
XP_009648071
UniProt:
G2WSW7
LinkDB
All DBs
Position
1
AA seq
739 aa
AA seq
DB search
MDGEDWQMRDAAGSNGVAGPQPPPDQGPSVNGTTSSDEEYDEGYDEEYEDSEDATVVSQL
RRRGQLPTGCCYDDRMKLHCNADFTSHPHHPEDPRRIEEIIKAFKKAGLLYTGPEANVAK
IVQHTPTKYMWRIAAREAAKEEILLAHTPDHYAWVENLSTMSYTELRALSVELDKGRASL
YVGSLSFPAALLSCGGAIDTCKQVVESNVKNAFAVIRPPGHHAEYDQSLGFCFFNNVPVA
VKVCQQEYPEICRKVLVLDWDVHHGNGIQNIFYQDPNVLYISIHVYENGQFYPGQPENPM
VPDGGMEHCGTGPGLGKNINIGWHAQGMGDGEYMAAFQKIIMPIAKEFNPDLVVISAGFD
AADGDELGGCFVTPPCYAHMTHMLMSLADGKLAVCLEGGYNLRAISTSAVAVARTLMGEP
PPRMEIPKINRDAARVLATVQAYQAPYWECMRPGIVNVADIQDQHATRLHDHVRLGQRQD
LATRHNMIPLYIQRDVLFKAYENQVLVTPNLQETERLLVILHDPPQLVAQPDSHDNHLES
HNAWIVDPVVEYIDWAVSQGFGVMDINVPASLPQEEDTDAFIPRSPEKIMQAQLQELVCY
LWDNYIQLYENATEIFLMGVGNAYLGVKVLLMGRDCKPRITGVVNFVTGTLRPVKSDVDP
DLSAWYKEHSQVYIASDHLCWKSEDLTRKVQKRRFGSVKRSPTNGLSKMMQLHAEDVQAW
ILQAIASNKPETTDDEKMS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggacggggaggactggcagatgcgcgatgccgcaggatccaacggtgttgcagggccc
cagcctcctccagatcagggcccctcagtcaacggcactacttcctccgacgaggagtat
gacgaaggctatgatgaggaatatgaggactcagaggacgccactgtcgtatctcagctg
cgccgtcgtggtcaacttccaacaggatgttgttatgatgatcggatgaagctgcactgt
aacgccgactttacctctcatcctcaccacccggaggacccacgtcgcatagaggagatc
atcaaggctttcaagaaagctggtttgctctacacagggcccgaagccaatgttgccaaa
attgtccaacacaccccgacaaagtacatgtggcgcatcgcggcccgcgaggccgccaag
gaagagattctcctcgcgcatactccagaccactatgcctgggtagagaacctgtcgacc
atgtcctacaccgaacttcgtgccctcagtgtcgagctcgacaagggccgtgcctctctc
tacgtcggcagtctttcctttccggcagcactgctgtcgtgtggaggcgccatcgacaca
tgcaagcaggttgtcgaaagcaatgtcaagaacgccttcgctgtcatccggccgccagga
caccatgccgagtacgatcagtcccttggattttgtttcttcaacaacgtcccagttgct
gtcaaggtctgccagcaggaataccccgaaatctgccgcaaggtcctcgtgctcgactgg
gacgttcaccatggcaacggcattcaaaacatcttttaccaagatccaaatgttctctac
atatccatacacgtctatgagaatggccagttttaccccggccagcctgaaaaccccatg
gtaccggatggtggtatggagcattgcggtactggtcctggtctcggcaagaacatcaac
attggctggcacgcgcaaggcatgggcgacggcgaatacatggctgccttccagaagatc
atcatgcccatcgcaaaggaatttaaccctgatctcgtagtcatctcggcaggtttcgat
gccgctgacggcgacgagctcggtggctgcttcgttacgcccccgtgctacgcccacatg
acgcacatgctcatgtctctcgccgacggcaagcttgccgtgtgtctcgaaggtggctac
aatctacgggcgatatcaacatccgccgtcgccgtcgcccggacgctcatgggcgaaccg
ccccctagaatggagatccccaagatcaaccgggatgcggcgagagtcttggccacggtg
caagcataccaagcgccgtactgggaatgcatgcggcccggcatcgtcaatgtggctgat
atccaggaccagcatgcgacgcgcttgcacgaccacgttagactcggacagcggcaggac
ctcgcgacgcgtcacaacatgatcccgctttacatccagcgagacgtacttttcaaggcg
tatgagaaccaagtgctggtgacgccaaacttgcaagaaacagaacgtcttctggttatt
ctgcatgacccgccgcaactggttgcccaacctgattctcatgacaaccatctggagtct
cacaacgcgtggattgttgatccggtcgtcgagtacatcgactgggcagtaagccagggt
ttcggcgtcatggacatcaatgtcccagcctcgttgcctcaagaagaagacacggatgct
tttattccccgctcgccagagaagatcatgcaagcccaattgcaggagttggtctgctat
ctgtgggacaattacatccagctttacgagaacgctacagagatcttcttgatgggtgta
ggtaatgcctacctgggagtcaaggtcctcctcatgggcagagattgtaagccgcgcatc
acaggtgttgtcaactttgtcacgggcacgctccgtcccgtcaagtcagacgtggatcca
gatctgtcagcctggtacaaggagcactcacaggtgtacatagcgagcgaccatttgtgc
tggaagagcgaggacttgacgcgaaaggtgcagaagcggcgattcggctcggtcaagcgg
agcccgaccaacggcctcagtaagatgatgcagctccacgcggaagacgtccaagcctgg
atcttgcaagccattgccagcaacaaacctgagacgacagacgacgagaagatgtcatga
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integrated database retrieval system
