Vicugna pacos (alpaca): 102534539
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Entry
102534539 CDS
T08098
Symbol
HDAC6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc04613
Neutrophil extracellular trap formation
vpc05014
Amyotrophic lateral sclerosis
vpc05034
Alcoholism
vpc05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
102534539 (HDAC6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
102534539 (HDAC6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
102534539 (HDAC6)
09165 Substance dependence
05034 Alcoholism
102534539 (HDAC6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vpc01009
]
102534539 (HDAC6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102534539 (HDAC6)
04131 Membrane trafficking [BR:
vpc04131
]
102534539 (HDAC6)
03036 Chromosome and associated proteins [BR:
vpc03036
]
102534539 (HDAC6)
Enzymes [BR:
vpc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
102534539 (HDAC6)
Protein phosphatases and associated proteins [BR:
vpc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102534539 (HDAC6)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
102534539 (HDAC6)
Membrane trafficking [BR:
vpc04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
102534539 (HDAC6)
Chromosome and associated proteins [BR:
vpc03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
102534539 (HDAC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
102534539
NCBI-ProteinID:
XP_015102762
UniProt:
A0A6J0AWJ6
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MTSTGQDPTTTRPRRSRHSPHSPPHDSSVTLKRGVKKGAALRSSPNLAEVKKKGRMKKLN
QAAEQDLIVGLQGLDLNLEARTLFGTGLVFDEQLNEFHCLWDDSFPEGPERLHAIKEQLI
QEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRGLADTYDSVYLHPNS
YTCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQ
KHDIQRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASDWSTTGFGQG
QGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATP
AGFAQLTHLLMGLAGGKLILSLEGGYNLRSLAEGVSASLHTLLGDPCPMLEFPGAPCRSA
QTSVSCALEALEPFWEVLVRSAETPEEEDTVEEEDVEEKEEEGLWQPPELPILTWPVLQA
RTGLVYDQQMMDHHSMWDSHHPEMPQRIQRIMRRLEELGLARRCLALPARPATDAELLTC
HSAEYMGRLRATEKMKTRELHRESANYDSIYICPSTFTCAQLATGAVCRLVEAVLAGEVL
NGIAVVRPPGHHAERDAACGFCFFNSVAVAARHAQAISGHALRILIVDWDVHHGNGTQHI
FEEDPSVLYISLHRYDHGTFFPMGDEGASSQIGQAAGTGFTVNVAWNGSRMGDTDYLAAW
HRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLANGHIILILE
GGYNLTSISESMAACTRSLLGDPLPMLTLLRPPLSGALASIAETIQVHRRYWRSLRVMKV
EDKEGPSSSELITKKSPQPAHPGSAKGLTMPEGNILDAGLGKATSASSVKESASETAVVE
LTQDQSSEAAIGGATLDQTTSEEATGGAEPIQNPPASCPVNQTPPTSPVQGATTQERSPR
KLIGNLRTLELDSEPQEPPEEKGLLGEAAGGQDTDESVLTQVFGDHADTDQVMFYAVTPL
PWCPHLVAVCPTPEAGLSVTQPCQDCGTHQENWVCLSCYQVYCGRYVNGHMLQHHEGSGH
PLVLSYADLSAWCYRCQAYVHHEALLAVKNIAYQNKFGEDLPHSH
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgacctccactggccaggatcccaccacaaccaggccgcgaaggagtaggcacagcccc
cactcgcccccccacgattccagcgtcaccttgaagcgaggtgttaagaagggtgctgca
ctccgctccagccctaatctagcggaggtaaagaagaaaggcagaatgaagaagcttaac
caagcagctgagcaagacctaatcgtggggctgcaaggactggatctgaaccttgaggcc
aggacactgtttggcactggcttggtgtttgatgagcagctcaatgaattccactgcctc
tgggatgacagcttccctgaaggccccgagcggctccatgccatcaaggagcagctgatc
caggagggcctcctggaccgctgcgtgtcctttcaggcccggttcgccgaaaaggaggag
ctgatgttggttcacagcctagaatacattgatctgatggagacaacccagtacatgaat
gagggggaactccgcggcctagcagacacctatgactcagtttatctgcatccgaactca
tacacctgtgcctgcctggcctcaggctccgtcctcaggctggtggatgcagtcctgggg
gctgagatccggaatggtatggctatcatcagacctcctggacaccatgcccagcacagt
cttatggatgggtattgcatgttcaaccacgtagccgtggctgcccgctatgctcaacag
aagcatgacattcagagggtccttatcgtggattgggatgtacaccatggtcaagggaca
cagttcacttttgaccaagaccccagcgtcctctatttctccatccaccgctatgagcag
ggtaggttctggcctcaccttaaggcctctgactggtccaccacaggttttggccaaggc
cagggatacaccatcaatgtgccttggaaccaggtggggatgcgagatgctgactatatt
gccgctttcctgcacgtcctgctgccagttgcccttgagttccagccacagctggtcctg
gtagctgctggttttgatgccctccaaggggaccccaagggcgagatggccgccactccg
gcagggttcgcccagctgacccacctactcatgggtctggcaggaggcaagctgatcctc
tcgctggagggtggctacaacctccgctccctggctgaaggcgtcagtgcctcgctccac
acccttctgggagacccttgtcccatgctggagttcccgggcgccccctgccggagtgcc
cagacttctgtctcctgcgccctggaagccctggagcccttctgggaggtcctggtgaga
tcagctgagaccccggaggaggaggacaccgtggaggaggaagatgtggaggagaaggag
gaggagggactgtggcagccccctgagctcccaatcctgacatggccagtgctgcaggct
cgcacagggctggtctacgaccaacagatgatggatcaccacagcatgtgggacagccac
caccccgagatgcctcagcgcatccagcgtatcatgcgccgtctggaggagctgggcctt
gccaggcgctgcctggccctgcccgcacgtcccgccacggatgctgagctgctcacctgc
cacagtgcggagtacatggggcgtctacgggccacggagaagatgaaaacccgggagctg
caccgcgagagtgccaactatgactccatctacatctgccccagcaccttcacctgcgcg
cagctggccactggggccgtgtgccgcctggtagaggctgtgctggcgggagaggttttg
aatggtattgccgtggttcgtccccccggacaccatgcagagcgggatgctgcttgcggt
ttctgctttttcaactcagtggctgtggctgctcgccatgcccaggccatcagtgggcat
gcgctgcggatcttgattgtggactgggatgtccatcacggtaatggaacccagcacata
tttgaggaggaccccagcgtgctctacatttccctgcaccgctatgatcatggtaccttc
ttccccatgggggatgagggcgccagcagccagataggtcaggctgcaggcactggcttc
accgtcaacgtggcctggaatgggtcccgcatgggtgacaccgactacctggctgcctgg
catcgtctggtgcttcccattgcctatgagtttaatccagagctggtgctggtctcagct
ggctttgacgctgcccggggagacccactgggtggctgccaggtgtcacctgagggctat
gcccacctcacccacctgctgatgggcctggccaatggccacattatcctgatcctagag
ggtggctataatctgacatccatctcggagtccatggctgcatgcacccgttccctcctt
ggggatccgctccccatgctgaccctcctgcggcccccactatcaggggccctggcctcg
atcgctgagaccatccaagtccatcgcagatactggcgcagcttgcgggtcatgaaggtc
gaagacaaagagggaccctccagttctgagttgatcaccaagaagtcaccccaaccagcc
catcctgggtcagccaaagggttgaccatgccagaagggaacattctggatgcaggcctg
ggaaaggccacctcagcatcatccgtgaaagagtccgcttcagagacagctgtggtggag
ctcactcaggaccagtcctcagaggcagccataggaggagccacactggaccagaccacc
tcggaagaggcaacagggggagctgagccgatccagaaccctccagcctcatgccctgtc
aaccagactcctcccacctcacccgtacaaggagccacaacccaggagcgatccccccgt
aagctgattgggaatctcaggaccttggaactggacagtgagcctcaggaaccccccgaa
gagaaggggctactaggagaggcagctggaggtcaggacacggatgaatcagtgctgacg
caggtctttggagaccatgctgacactgaccaggtcatgttttatgctgtgacgccactc
ccctggtgtccccatttggtggcagtatgccccacacctgaagcaggcctcagtgtgacc
caaccctgtcaggactgtggaacacaccaggagaactgggtgtgtctgtcttgctatcag
gtctactgcggtcgttacgtcaacggccatatgctccaacaccatgaaggctcgggacac
ccgctggtactcagctatgctgacctgtctgcctggtgttaccgctgtcaggcctatgtc
catcacgaggctctcctagccgtgaagaacatcgcctaccagaacaagtttggggaggat
ttgccccactcacactaa
DBGET
integrated database retrieval system
