Vigna umbellata (ricebean): 124836102
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Entry
124836102 CDS
T09662
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124836102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124836102
04121 Ubiquitin system [BR:
vum04121
]
124836102
03036 Chromosome and associated proteins [BR:
vum03036
]
124836102
03400 DNA repair and recombination proteins [BR:
vum03400
]
124836102
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
124836102
Ubiquitin system [BR:
vum04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
124836102
Chromosome and associated proteins [BR:
vum03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
124836102
DNA repair and recombination proteins [BR:
vum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
124836102
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
RTT107_BRCT_5
zf-RING_6
zf-C3HC4_4
zf-RING_5
zf-C3HC4_2
PTCB-BRCT
zf-RING_2
zf-Nse
Motif
Other DBs
NCBI-GeneID:
124836102
NCBI-ProteinID:
XP_047167135
LinkDB
All DBs
Position
Unknown
AA seq
661 aa
AA seq
DB search
MDDSTKPNAGKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCDSCLADCVT
AGAGSECAACNAKYAQTDVRHVPFVENVVAIYKSLEATFCASLFHKHSSGDERVLEPCSA
ILNSTSSSIQAGKLPLNFPNLNKVGVVKNLKSKIAFHDKAEELELSHGRGKPNPMQSSQM
EMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPDRLGNSSLKRACTGNGNLKEKM
GQLRSESSASETEGLGRDPKRQKVQPTDAPNDFTPTGSICSFCQSSKTSEATGPMLHYAN
GNLVTGDAAMKPNVIPVHRVCIDWAPQVYFVDEVVKNLKAELARGAKLKCSKCNLKGAAL
GCYVKSCRRTYHVTCALDISTCRWDHEDFLLLCPFHSNVKFPCEKSRSKKQAARKHPNLP
NLPSHHSNTLEASQDDGKNLIFCGSALTNEEKVLLLNYASKVGATVTKFWTSNVTHVIAS
TDANGACSRTLKVLMAILNGRWVLKLDWIKACMEEKNPVEEEPYEISVDNQGCQGGPRAG
RLKALANEPKLFSGLKFYFSGDYMSTYKEDLEELIEVGGGTVLRSKEELEAQRHECKVNS
PKFLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFV
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacgattccacaaaacctaacgccggcaaaaccaaacttctcaatccatggatgctt
cacttccagaaactcgctcttgaactcaagtgtcctctctgtttgagtttattcaagagg
ccggtgttacttccttgcaaccaccttttctgcgattcatgcttagctgattgcgtaaca
gctggtgctggttctgaatgtgctgcttgtaatgcaaagtacgctcaaacagatgtaagg
cacgtgcctttcgtggaaaatgtggtagcaatatataaaagcttggaggccaccttttgt
gcaagtttgtttcataaacattcttctggtgatgagagggttttggagccatgctcggca
attcttaattcaacttctagcagtatacaagctggcaaacttcctctgaatttccctaat
ttgaacaaggttggggttgtcaagaatctcaaatccaagattgcatttcatgataaagct
gaagagcttgagttgtctcatgggagaggaaagcctaatccgatgcaatcttcccagatg
gaaatggatgtgaatcaagtgacacaatcagccccagatagccctcctttttgtgatacc
aaaggttcagataatgactgcagtgatcaagacagtgagcatccactacctcctgataga
ctgggaaactcttccttaaagagagcttgtacaggaaatggaaatttgaaagagaaaatg
ggacaactaaggtcagaaagttcagcctctgaaactgagggtcttggaagggatcccaag
agacagaaagttcagcctacagatgctccaaatgactttactccaactggaagtatctgt
tcattttgccaatcttccaaaacctctgaggctactggaccaatgctgcattatgccaat
ggaaacttagttactggagatgcagcaatgaagccaaatgttatacctgtgcatagagtt
tgcattgactgggcaccacaagtgtactttgttgatgaagtggttaagaatctcaaggcg
gaattggcaaggggagcaaaacttaaatgcagtaaatgtaatctaaagggagctgctctt
ggttgctatgtcaaatcatgcagaagaacttatcatgttacttgtgcacttgacatctca
acatgtcgttgggatcatgaggattttcttttgctctgccccttccattcaaacgtcaaa
tttccatgtgagaaatcaagatctaagaagcaggcagctcggaagcatcccaatttgcct
aatttgccatcgcaccactcaaatactcttgaagcttcacaagatgatggtaaaaatttg
attttctgtggatccgcgttaacaaatgaggaaaaggtacttttgctcaattatgcaagt
aaggttggtgcaactgtgacgaaattctggacatctaatgttacacatgtaatagcatca
actgatgctaatggagcatgctctaggacattgaaagttctcatggctattctaaatgga
cgatgggtactaaaactggattggataaaagcatgcatggaagagaaaaaccccgtagaa
gaagaaccatatgaaattagtgttgacaaccaagggtgtcaaggtggcccaagagctggc
agacttaaggcattggccaatgagccaaagctattcagtggcttaaagttttatttttct
ggggattatatgtcaacttataaggaagaccttgaagagttaattgaagtgggtggaggt
actgttttgagaagcaaggaagaattggaagcgcaaagacatgaatgcaaagtgaattct
ccaaagtttcttgttgtttacaaccttgatcccccacaaggatgcaagttaggggaagaa
gtatcaattctctggcaaagactcaacgatgcagaggatttagctgccaatactttacaa
gtgattggtcacacatggattcttgaatcaattgctgcatgtaagttgcagccttttgtt
aactaa
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