Xenopus laevis (African clawed frog): 380178
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Entry
380178 CDS
T01010
Symbol
hdac6.L, hd6, hdac6, jm21
Name
(RefSeq) histone deacetylase 6 L homeolog
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xla01009
]
380178 (hdac6.L)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
380178 (hdac6.L)
04131 Membrane trafficking [BR:
xla04131
]
380178 (hdac6.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
380178 (hdac6.L)
Enzymes [BR:
xla01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
380178 (hdac6.L)
Protein phosphatases and associated proteins [BR:
xla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
380178 (hdac6.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
380178 (hdac6.L)
Membrane trafficking [BR:
xla04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
380178 (hdac6.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
380178 (hdac6.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
380178
NCBI-ProteinID:
NP_001080486
Xenbase:
XB-GENE-5874020
UniProt:
Q7ZYF0
LinkDB
All DBs
Position
8L:850029..867222
Genome browser
AA seq
1286 aa
AA seq
DB search
MASPQDPTAVPPRGLTGASRSPVTPACSMGKPRKKGASPQGPQSLQEVKKRGHRMKRSPD
QQLCDQLEGLNLLAEAAVQGTGLVYDEQMAHNYCLWDENFPECPGRIWAVRDKMAEYGLA
ERCVAVPAREASEEEILLIHSPQYVALMRSTQKMTMDELRALSDRYDSVYLHPTSFTCAS
LAVGSVLQLVDRVQHGEIRNGLAVVRPPGHHAHTDQMNGYCMFNQLAIAARYAQLTYGAK
RVLIVDWDVHHGQGTQFIFESDPSVLYFSVHRYDNGGFWPHLKESASSAVGKERGERFNV
NVAWNKTRMSDADYIHVFLNVLLPVAYEFQPHLVLVAAGFDSVVGDPKGEMSATPACFSH
LTHLLMSLAQGRLILSLEGGYNQRSLAEGACASLKALLGDPCPRLTLPSAPCQSALDSMS
DTISAHCSLWKMLQDYESEGEPIIEPQSAKDGPPEGTDEPPLEKFLEQAMIEVMRKVPEQ
RTALVYDEQMMEHRNMWDCYHPESPQRINQIFKRHKDLGLLERCSRLPSRLATQKELQMC
HSLSYIQKIEASAHMKPRDLHRLGDEYNSIYINSKSYHSARLAAGSTFNVVEAVVTGKAQ
NGIGIVRPPGHHAEPGEACGFCFFNTVALAARYAQRLQSQSEDPLRVMILDWDVHHGNGT
QHIFQEDASVLYMSLHRYDEGLFFPNSEDASHDKVGIGKGAGYNVNIPWNGGKMGDVEYL
MAFHRVVMPIAYEFNPQLVLISAGFDAARGDPLGGCQVSPEGYAHMTHLLMSLAGGRVIL
VLEGGYNLTSISESMVMCTRSLLGDPPPVLSDLRPPKSSALNSVCKVRQAHRKYWRSLRL
NVVGPPPKSTQGAKNLQHSPMRNSPRKGRFAAEAGPLTESKISSQGASSPKKIPSEVTVT
PLASPLSSVSIEETPIPLIPDSKFSPEEVANQFVSAETAVQFAAPQYKMSTEEVANKLAS
PQGLTSLESTSSQLVSNREAIAPAWEHETPKSPPTADSQKVPMGGLVAAEDIADALAERG
LTMEILGCSEQRENVCKCKASPQSLQHEDKLLDVQSPGVRIASGKESEAPVPPCSTVEER
PLEQILRDLQLSDDASSSSSIAMAHTADLDPRDRAIRKSFITTGRDTPEEEYTEGSYIQV
ANAPPNEQELLDEAAGGSEAGNSTIGFEVFLNSMEDESDVGFAVMPLSWCPHLGSVCAVP
RDGVDVSQPCAQCGSELENWLCLTCYQVLCGRYVSQHMLSHGLTSGHHLVLSFSDLSVWC
YGCESYVHNEALFPAKSAAYSSKFEE
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcctctccacaggatcctacagcagtgcccccccgggggctgaccggtgcctcccgc
tctcctgtgacccccgcatgcagcatggggaagcccaggaagaaaggtgcatccccccaa
ggcccccagtccctgcaggaagtaaagaagaggggccacaggatgaagcgcagccctgac
cagcagctgtgtgaccaactcgaggggctgaatttgttggcagaggcagccgtgcaagga
acgggactggtttatgatgagcagatggcacacaactactgtttatgggatgaaaacttt
cctgaatgcccaggccgtatctgggctgtgagagacaagatggctgaatacggcctggca
gagcgatgtgtggcggtgccggctcgtgaagcatcagaggaggaaatcttgctcattcac
agcccccagtatgtggcactgatgagatccactcagaaaatgaccatggatgagcttaga
gctctgtctgaccgctatgattcggtgtacttgcacccgacgtctttcacttgcgcctct
ttggccgtgggctcagtgctccagctggtggatagagttcagcatggggagatccgcaat
ggattggctgttgtcaggcctcctggacatcacgcacacactgaccagatgaacggttac
tgcatgtttaaccagcttgctattgctgcccgatacgcccaactgacatatggtgccaaa
cgggtcctaattgtagactgggacgtgcatcacggtcagggcacacagttcatatttgag
agtgatcccagtgtcctgtacttttctgtccatcgctatgacaacgggggtttttggccc
catctaaaagaatcggccagttcagctgtggggaaggaacgaggagagcgattcaatgtg
aatgtggcctggaacaagaccagaatgagtgatgctgattatatccacgtgttccttaat
gtcctacttcctgtcgcctacgagttccagcctcaccttgtgttggtagcagctgggttt
gactctgtggttggagaccctaagggagagatgtcggccaccccagcgtgtttctctcac
ctcactcacctgctgatgtcactggcacagggcagactcattctttcactagagggtggg
tacaatcagcgctcattggcagaaggagcctgtgcatctctgaaagccttactgggtgac
ccgtgcccaagactgaccctgccatctgcaccctgtcaaagtgccctggattcaatgtct
gacacaataagtgcccattgcagcttatggaagatgctgcaggattacgagagtgaagga
gagcccattattgaaccccagagtgctaaagatggcccccctgaggggacagatgagcct
cctctggagaaatttctagaacaggcaatgatcgaagtgatgcggaaagtgccagagcag
cgaacagcgctggtgtatgatgagcaaatgatggagcatcgcaatatgtgggactgttat
cacccagagtctccacagaggataaaccagatatttaagcggcacaaggatctggggctg
ttagaacgttgcagtcgccttccatcacgcttggccactcagaaggagctacagatgtgc
cacagtctctcctacatccagaagattgaggcatctgctcacatgaaaccacgagacctg
cacaggctgggggatgagtacaactccatttatatcaattccaaatcctaccacagtgcc
cggctggcagctggctctaccttcaatgtagtggaggccgtggttacaggaaaggcacaa
aatggaattggcattgttcgccctccgggtcatcatgcagaaccaggggaagcctgtggt
ttctgtttctttaacaccgtggcactagctgcccgctatgcacagagactgcagagccaa
tcagaggatccactcagagtaatgattttggattgggatgtacaccatggcaatggcacg
cagcacatcttccaggaggatgccagtgtgctctacatgtccctccaccgatacgatgag
ggtctcttctttccaaattcagaagatgcatcacatgacaaggttggcattgggaagggg
gcaggatacaatgtgaacatcccttggaatggcggaaagatgggggatgtggaatattta
atggcgtttcacagagtggtgatgcccattgcttatgagtttaaccctcagctagttctc
atatcggctgggtttgacgcggcccgtggggatccacttgggggctgccaggtgagccct
gaaggttatgcccatatgacacaccttctgatgagcctggcaggtggcagagtcatcctg
gtgctagagggtgggtacaatctcacatccatctccgagtccatggttatgtgcacccga
tcgctcttgggggaccccccaccagttctgtctgacctgcgacctccaaaatcatcagct
ttgaactccgtttgcaaagtccgtcaggcacatcgcaaatactggcgcagccttcggcta
aatgtggtaggacctccccccaagtctactcagggagcaaaaaatctccagcattcccca
atgaggaactctccccgtaaaggaagatttgctgcagaggctggacccttaacagagagc
aagatctcttctcaaggagcttcatctccaaaaaaaatcccctcagaagtgacagtcacc
cccctggcatcaccactgagctcagtctccatagaagagacacctatcccattgatacca
gacagcaaattctccccagaagaggtagccaaccaatttgtatctgcagagactgctgtt
cagttcgctgcaccacagtacaagatgtccacagaggaggtagccaataagctggcatca
cctcaaggactgacatcacttgaaagtacaagcagtcagctggtatccaacagggaagcg
attgcgccagcatgggaacatgaaacccccaaatctcctcccaccgcagacagccagaaa
gtacctatgggaggattagtagcagcagaagacattgcagatgccctagcagagaggggc
cttacaatggagatattggggtgctctgagcagcgagagaatgtgtgtaaatgtaaagca
tctccacaatccttgcagcatgaggacaagttattagacgttcagtctccaggggtgaga
attgcatccgggaaagagagtgaggcaccagtgcccccctgttccactgttgaggaaaga
cctttagaacaaattctcagagacttgcagttgagtgatgatgcgtccagcagttcctcc
attgccatggctcatacagctgacttggatcctagggacagagccataaggaaatccttt
atcactacaggaagagacactccggaggaagagtatacagagggcagttatatacaggtg
gctaatgcaccacccaatgagcaggagctgctggacgaggctgcggggggctcggaagct
ggaaactccaccataggctttgaggtttttctgaactctatggaggatgagtcggatgtg
ggatttgcagtcatgccgctgtcctggtgtcctcacttgggctctgtgtgtgctgtgccc
cgggatggtgtggatgtgagccagccgtgtgcccagtgtggcagtgaactggagaactgg
ctctgtctgacttgttaccaggtgctgtgtggcaggtatgtctcccaacacatgctgagc
catggactcacctctggacatcaccttgttctcagcttctctgacttgtctgtgtggtgc
tacggctgtgagtcctatgtacataacgaggccttgtttccagccaaatctgctgcctac
agctccaagtttgaggagtag
DBGET
integrated database retrieval system
