KEGG   PATHWAY: vfu05111
Entry
vfu05111                    Pathway                                
Name
Biofilm formation - Vibrio cholerae - Vibrio furnissii
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. On the other hand, biofilm formation is an energetically costly process and therefore must be tightly regulated and plastic, enabling biofilm bacteria to be responsive to the various environmental cues. The quorum sensing (QS) pathway of Vibrio cholerae activates the expression of VpsR, VpsT and AphA (the main activators of biofilm formation) at low cell density and HapR (the main repressor) at high cell density. At low cell density, biofilm genes, including Vibrio polysaccharide (VPS) biosynthesis genes and the major extracellular matrix genes RbmA, RbmC, and Bap1, are expressed. The QS pathway also leads to induction of virulence factors such as toxin coregulated pilus (TCP) and cholera toxin (CTX), essential for colonization of the host and enterotoxicity, respectively. The VarS/VarA signaling system responds to an unknown environmental cue and represses biofilm production by process which involves the regulatory sRNAs CsrB, CsrC and CsrD and the RNA-binding protein CsrA, interfering with LuxO of the QS pathway. The second messenger cAMP acts as a repressor of biofilm formation. cAMP is generated by adenylate cyclase CyaA, and in complex with cAMP receptor protein (CRP), this nucleotide has been shown to upregulate HapR production through the positive regulation of the CAI-I synthase CqsA and the negative regulation of Fis. The second messenger c-di-GMP is a key signalling molecule controlling motility and biofilm matrix production. High cellular levels of c-di-GMP promote enhanced transcription of genes involved in biofilm formation, possibly by promoting VpsT-mediated transcriptional activation of vps genes.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
vfu05111  Biofilm formation - Vibrio cholerae
vfu05111

Organism
Vibrio furnissii [GN:vfu]
Gene
vfu_A02965  S-ribosylhomocysteinase [KO:K07173] [EC:4.4.1.21]
vfu_B00358  sensor histidine kinase LuxQ [KO:K10909] [EC:2.7.13.3 3.1.3.-]
vfu_B00359  luxP protein [KO:K10910]
vfu_B00269  CAI-1 autoinducer synthase [KO:K10915] [EC:2.3.-.-]
vfu_B00270  sensor histidine kinase/response regulator LuxN [KO:K10916] [EC:2.7.13.3 3.1.3.-]
vfu_A02580  phosphorelay protein [KO:K10911]
vfu_A02581  LuxO repressor protein [KO:K10912]
vfu_A00015  RNA-binding protein Hfq [KO:K03666]
vfu_A00617  Predicted transcriptional regulator [KO:K10917]
vfu_A02550  AphB/LysR family protein [KO:K10918]
vfu_B00730  transcriptional regulator, LuxR family [KO:K20918]
vfu_A00963  sigma-54 dependent transcriptional regulator [KO:K20919]
vfu_A00616  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
vfu_B00428  hypothetical protein [KO:K20920]
vfu_B00426  polysaccharide export protein [KO:K20988]
vfu_B00424  exopolysaccharide biosynthesis protein [KO:K16554] [EC:2.7.10.3]
vfu_A00509  type II secretory pathway, component EpsC [KO:K02452]
vfu_A00510  general secretion pathway protein D [KO:K02453]
vfu_A00511  general secretion pathway protein E [KO:K02454] [EC:7.4.2.8]
vfu_A00513  general secretion pathway protein F [KO:K02455]
vfu_A00514  general secretion pathway protein G [KO:K02456]
vfu_A00515  general secretion pathway protein H [KO:K02457]
vfu_A00516  general secretion pathway protein I [KO:K02458]
vfu_A00517  general secretion pathway protein J [KO:K02459]
vfu_A00518  general secretion pathway protein K [KO:K02460]
vfu_A00519  general secretion pathway protein L [KO:K02461]
vfu_A00520  General secretion pathway protein M (Cholera toxin secretion protein epsM) [KO:K02462]
vfu_A00521  general secretion pathway protein N [KO:K02463]
vfu_A02616  transcriptional regulator ToxR [KO:K10921]
vfu_A02617  transmembrane regulatory protein ToxS [KO:K10922]
vfu_A00928  outer membrane protein OmpU [KO:K08720]
vfu_A00883  OpaR [KO:K10913]
vfu_B00520  metalloprotease [KO:K08604] [EC:3.4.24.25]
vfu_A00841  sensor histidine kinase/response regulator [KO:K07678] [EC:2.7.13.3]
vfu_A02143  transcriptional regulator, LuxR family [KO:K07689]
vfu_A02975  carbon storage regulator [KO:K03563]
vfu_A02638  glucose-specific phosphotransferase enzyme IIA component [KO:K02777] [EC:2.7.1.-]
vfu_A01319  glucose-specific PTS system IIBC components [KO:K02779] [EC:2.7.1.199]
vfu_A00435  adenylate cyclase [KO:K05851] [EC:4.6.1.1]
vfu_A00648  cAMP-regulatory protein [KO:K10914]
vfu_A00072  DNA-binding protein Fis [KO:K03557]
vfu_B01367  GGDEF family protein [KO:K20954] [EC:2.7.7.65]
vfu_A01547  GGDEF family protein [KO:K20955] [EC:2.7.7.65]
vfu_B01074  GGDEF family protein [KO:K20956] [EC:2.7.7.65]
vfu_A01418  hypothetical protein [KO:K20957] [EC:2.7.7.65]
vfu_A01039  GGDEF family protein [KO:K20958] [EC:2.7.7.65]
vfu_A01986  GGDEF family protein [KO:K20959] [EC:2.7.7.65]
vfu_B01380  GGDEF family protein [KO:K20962] [EC:3.1.4.52]
vfu_A00450  hypothetical protein [KO:K07181] [EC:3.1.4.52]
vfu_A00443  GGDEF family protein [KO:K20964] [EC:3.1.4.52]
vfu_A00950  c-di-GMP phosphodiesterase A-related protein [KO:K20965] [EC:3.1.4.52]
vfu_A01001  c-di-GMP phosphodiesterase A-related protein [KO:K20966] [EC:3.1.4.52]
vfu_A03112  MSHA biogenesis protein MshE/Type II secretory pathway [KO:K12276]
vfu_A03108  MSHA pilin protein MshA [KO:K10924]
vfu_A03109  MSHA pilin protein MshB [KO:K10925]
vfu_A03107  MSHA pilin protein MshC [KO:K10926]
vfu_A03106  MSHA pilin protein MshD [KO:K10927]
vfu_A01186  sigma-54 dependent transcriptional activator [KO:K10941]
vfu_A00733  RNA polymerase factor sigma-54 [KO:K03092]
vfu_A02982  RNA polymerase sigma factor RpoS [KO:K03087]
vfu_A01187  sensory box sensor histidine kinase [KO:K10942] [EC:2.7.13.3]
vfu_A01188  FlaM [KO:K10943]
vfu_A01403  acetoacetate metabolism regulatory protein AtoC [KO:K10943]
vfu_A01386  flagellar-specific transcription initiation factor sigma, LafS [KO:K02405]
vfu_A02234  flagellar biosynthesis sigma factor [KO:K02405]
vfu_A01253  RNA polymerase sigma factor for flagellar operon [KO:K02405]
Compound
C00031  D-Glucose
C00044  GTP
C00092  D-Glucose 6-phosphate
C00575  3',5'-Cyclic AMP
C16421  AI-2
C16463  3',5'-Cyclic diGMP
C16640  CAI-1
C18076  5'-Phosphoguanylyl(3'->5')guanosine
Reference
  Authors
Teschler JK, Zamorano-Sanchez D, Utada AS, Warner CJ, Wong GC, Linington RG, Yildiz FH
  Title
Living in the matrix: assembly and control of Vibrio cholerae biofilms.
  Journal
Nat Rev Microbiol 13:255-68 (2015)
DOI:10.1038/nrmicro3433
Reference
  Authors
Dang H, Lovell CR
  Title
Microbial Surface Colonization and Biofilm Development in Marine Environments.
  Journal
Microbiol Mol Biol Rev 80:91-138 (2016)
DOI:10.1128/MMBR.00037-15
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
PMID:9371445
  Authors
Sandkvist M, Michel LO, Hough LP, Morales VM, Bagdasarian M, Koomey M, DiRita VJ, Bagdasarian M
  Title
General secretion pathway (eps) genes required for toxin secretion and outer membrane biogenesis in Vibrio cholerae.
  Journal
J Bacteriol 179:6994-7003 (1997)
DOI:10.1128/JB.179.22.6994-7003.1997
Reference
  Authors
Lenz DH, Miller MB, Zhu J, Kulkarni RV, Bassler BL
  Title
CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae.
  Journal
Mol Microbiol 58:1186-202 (2005)
DOI:10.1111/j.1365-2958.2005.04902.x
Reference
  Authors
Houot L, Watnick PI
  Title
A novel role for enzyme I of the Vibrio cholerae phosphoenolpyruvate phosphotransferase system in regulation of growth in a biofilm.
  Journal
J Bacteriol 190:311-20 (2008)
DOI:10.1128/JB.01410-07
Reference
  Authors
Liang W, Silva AJ, Benitez JA
  Title
The cyclic AMP receptor protein modulates colonial morphology in Vibrio cholerae.
  Journal
Appl Environ Microbiol 73:7482-7 (2007)
DOI:10.1128/AEM.01564-07
Reference
  Authors
Lenz DH, Bassler BL
  Title
The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensing.
  Journal
Mol Microbiol 63:859-71 (2007)
DOI:10.1111/j.1365-2958.2006.05545.x
Related
pathway
vfu02024  Quorum sensing
vfu02040  Flagellar assembly
vfu03070  Bacterial secretion system
KO pathway
ko05111   
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